PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009767489.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family AP2
Protein Properties Length: 498aa    MW: 56022.6 Da    PI: 7.1448
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009767489.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.46.3e-17154203155
             AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                     s+y+GV++++++grW+++I+d      + k+++lg f+ta  Aa+a+++a+ k++g
  XP_009767489.1 154 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 203
                     78*******************......55************************997 PP

2AP240.95.1e-13246296155
             AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                     s+y+GV+ +k  grW+A+   +     +k+++lg f+t+ eAa+a+++a  k +g
  XP_009767489.1 246 SKYRGVTLHK-CGRWEARMGQF--L-GKKYVYLGLFDTEVEAARAYDKAVIKCNG 296
                     89********.7******5553..2.26**********99*********988665 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008475.8E-9154203IPR001471AP2/ERF domain
SuperFamilySSF541719.81E-16154212IPR016177DNA-binding domain
CDDcd000184.43E-11155210No hitNo description
Gene3DG3DSA:3.30.730.104.5E-17155211IPR001471AP2/ERF domain
SMARTSM003804.5E-31155217IPR001471AP2/ERF domain
PROSITE profilePS5103217.596155211IPR001471AP2/ERF domain
SuperFamilySSF541717.85E-17246306IPR016177DNA-binding domain
PfamPF008472.1E-8246295IPR001471AP2/ERF domain
CDDcd000185.23E-24246304No hitNo description
Gene3DG3DSA:3.30.730.104.3E-16247305IPR001471AP2/ERF domain
PROSITE profilePS5103215.382247304IPR001471AP2/ERF domain
SMARTSM003802.1E-30247310IPR001471AP2/ERF domain
PRINTSPR003674.2E-5248259IPR001471AP2/ERF domain
PRINTSPR003674.2E-5286306IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010073Biological Processmeristem maintenance
GO:0010093Biological Processspecification of floral organ identity
GO:0048316Biological Processseed development
GO:0048481Biological Processplant ovule development
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 498 aa     Download sequence    Send to blast
MWNLNDSPNR RMEDESEEGC SSPIELDEKG KRVGSVSNSS SSALVIEEGN NSEEEEDGEK  60
GKKKRNTPSK IFGFSVNDDN FSSESEPPVT RQFFPVDESE MGGGSINFPR AQWAGVKFCQ  120
SEPRGNTIVG NPTVTQQQQQ PIKKSRRGPR SRSSQYRGVT FYRRTGRWES HIWDCGKQVY  180
LGGFDTAHAA ARAYDRAAIK FRGVEADINF NLEDYEAELK QMTNLTKEEF VHVLRRQSTG  240
FPRGSSKYRG VTLHKCGRWE ARMGQFLGKK YVYLGLFDTE VEAARAYDKA VIKCNGKDAV  300
TNFDRSIYEN ELNSTEPADN AADHNLDLSL GGSNSKESSR EIGDNKGQNS SSLQLDAHWR  360
HQESRSKLPS PIGFDGQRRD GYNETETLQL LSQTHLNIPG SLQPNINEMQ RIGQFIRDGE  420
SHMVQVFPRQ FSSYQIPSPS SSNVGRIGGT NSQEWYPNNI PPHIFATAAA SSGFPQQIVR  480
PQNWSQNNGF HHNFMRPP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU6773820.0EU677382.1 Solanum lycopersicum APETALA2-like protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009767489.10.0PREDICTED: floral homeotic protein APETALA 2
SwissprotP479271e-130AP2_ARATH; Floral homeotic protein APETALA 2
TrEMBLA0A097BTY80.0A0A097BTY8_TOBAC; AP2 transcription factor SlAP2c
STRINGPGSC0003DMT4000165850.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA20192365
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36920.21e-125AP2 family protein